PSMCC Publications:
Identification and Characterization of the Core Rice Seed Microbiome
Alexander W. Eyre, Mengying Wang, Yeonyee Oh, and Ralph A. Dean
Phytobiomes, Vol 3(2), e-ISSN: 2471-2906, 2019
https://apsjournals.apsnet.org/doi/10.1094/PBIOMES-01-19-0009-R
Analysis of leaf microbiome composition of near‐isogenic maize lines differing in broad‐spectrum disease resistance
Maggie R. Wagner Posy E. Busby Peter Balint‐Kurti
New Phytologist, Vol 225(5), pages 2152-2165, 2020
https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16284
Heterosis of leaf and rhizosphere microbiomes in field‐grown maize
Maggie R. Wagner Joseph H. Roberts Peter Balint‐Kurti James B. Holland
New Phytologist, early release, June 2020
https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16730
Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
Manuel Kleiner
mSystems 4:e00115-19. https://doi.org/10.1128/mSystems.00115-19
Bioinformatics workflow:
DADA2 ITS Pipeline Workflow (1.8)
Illumina sequenced PE files>an amplicon sequence variant (ASV) table & freq>assigns taxonomy of output ITS sequence variants using the UNITE database
Benjamin Callahan
https://benjjneb.github.io/dada2/ITS_workflow.html
