Publications

PSMCC Publications

Identification and Characterization of the Core Rice Seed Microbiome
Alexander W. Eyre, Mengying Wang, Yeonyee Oh, and Ralph A. Dean
Phytobiomes, Vol 3(2), e-ISSN: 2471-2906, 2019
https://apsjournals.apsnet.org/doi/10.1094/PBIOMES-01-19-0009-R

Analysis of leaf microbiome composition of near‐isogenic maize lines differing in broad‐spectrum disease resistance
Maggie R. Wagner Posy E. Busby Peter Balint‐Kurti
New Phytologist, Vol 225(5), pages 2152-2165, 2020
https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16284

Heterosis of leaf and rhizosphere microbiomes in field‐grown maize
Maggie R. Wagner Joseph H. Roberts Peter Balint‐Kurti James B. Holland
New Phytologist, early release, June 2020
https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16730

Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
Manuel Kleiner
mSystems 4:e00115-19. https://doi.org/10.1128/mSystems.00115-19

Bioinformatics workflow

DADA2 ITS Pipeline Workflow (1.8)
Illumina paired-end reads are processed into an amplicon sequence variant (ASV) table with associated frequencies, and taxonomy is assigned to the resulting ITS sequence variants using the UNITE database.
Benjamin Callahan
https://benjjneb.github.io/dada2/ITS_workflow.html